Issues

• BPA embargo dates aren't available on the project endpoint

  AustralianBioCommons/atol-canopy#75 · Filter by author TomHarrop opened on Oct 16, 2026
  1

• Add three-letter Data Portal code for each initiative

  AustralianBioCommons/atol-canopy#74 · Filter by author TomHarrop opened on Oct 14, 2026
  2

• Add reuse_preferences field to sample table

  AustralianBioCommons/atol-canopy#73 · Filter by author keeva-c opened on Oct 13, 2026

• Track the Data Portal's ARDC handles in Canopy

  AustralianBioCommons/atol-canopy#72 · Filter by author TomHarrop opened on Oct 8, 2026
  3

• Notes on data release

  AustralianBioCommons/atol-canopy#71 · Filter by author TomHarrop opened on Oct 2, 2026

• Switch from ERS to SAMEA as the primary sample accession

  AustralianBioCommons/atol-canopy#69 · Filter by author keeva-c opened on Sep 24, 2026
  1

• Review Specimen naming on ENA

  AustralianBioCommons/atol-canopy#68 · Filter by author TomHarrop opened on Sep 22, 2026
  2

• organisms - replace augustus_dataset_name with tiberius_model

  AustralianBioCommons/atol-canopy#67 · Filter by author TomHarrop opened on Sep 16, 2026

• Possible constraint - multiple qc_reads entries with the same checksums should be disallowed

  AustralianBioCommons/atol-canopy#66 · Filter by author TomHarrop opened on Sep 9, 2026

• Return data for genome note

  AustralianBioCommons/atol-canopy#61 · Filter by author keeva-c opened on Aug 25, 2026

• Work out where to store primary/secondary assembly files, and stats

  AustralianBioCommons/atol-canopy#60 · Filter by author TomHarrop opened on Aug 25, 2026

• assemblies need to be linked to more than one project

  AustralianBioCommons/atol-canopy#57 · Filter by author TomHarrop opened on Aug 24, 2026

• Canopy assembly objects use the specimen-level sample ID in the read_files dict

  AustralianBioCommons/atol-canopy#54 · Filter by author TomHarrop opened on Aug 21, 2026

• /api/v1/assemblies/submission/ should accept the assembly_run_id

  AustralianBioCommons/atol-canopy#52 · Filter by author TomHarrop opened on Aug 20, 2026

• Accessions not synced between entity and entity_submission tables

  AustralianBioCommons/atol-canopy#50 · Filter by author keeva-c opened on Aug 13, 2026
  4

• Can't submit additional Samples and Experiments after the genomic data BioProject is created

  AustralianBioCommons/atol-canopy#49 · Filter by author TomHarrop opened on Aug 12, 2026
  2

• /api/v1/assemblies/{assembly_id}/qc-reads/report accepts multiple identical reports

  AustralianBioCommons/atol-canopy#48 · Filter by author TomHarrop opened on Aug 11, 2026

• Not sure how to look up Run brokering info by bpa_package_id

  AustralianBioCommons/atol-canopy#47 · Filter by author TomHarrop opened on Aug 11, 2026

• Can't submit assembly-level BioProjects from the Broker

  AustralianBioCommons/atol-canopy#46 · Filter by author TomHarrop opened on Aug 7, 2026
  5

• The assemblies/intent/ endpoint doesn't return a dataset_id, even if the ToLID has been assigned

  AustralianBioCommons/atol-canopy#45 · Filter by author TomHarrop opened on Aug 5, 2026

• Check assemblies/manifest/ and assemblies/intent/ output against manifest schema

  AustralianBioCommons/atol-canopy#43 · Filter by author TomHarrop opened on Aug 4, 2026
  1

  

• 504 Gateway Time-out on /api/v1/taxonomy-info/bulk-upsert endpoint

  AustralianBioCommons/atol-canopy#42 · Filter by author TomHarrop opened on Aug 3, 2026

• The meaning of id is different for different endpoints

  AustralianBioCommons/atol-canopy#41 · Filter by author TomHarrop opened on Aug 3, 2026
  1

• Review runs and stage runs file list handling

  AustralianBioCommons/atol-canopy#40 · Filter by author TomHarrop opened on Jul 23, 2026

• NCBI taxonomy API failing on too many requests

  AustralianBioCommons/atol-canopy#39 · Filter by author keeva-c opened on Jul 22, 2026