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Loaded images are gray scale #49
Description
Activity
Hi aknckaan,
Could you give more information about your situation?
Remember that someone else will not know anything about your system, versions, whether you are interpreting your traceback correctly, etc. Here is an example issue I made up, where someone more experienced could either help the programmer understand what they have done wrong or find the problem in the package.
In this case it turns out the programmer has mistakenly added
()at the end ofimages.sizeswhich tries to call on a function instead of a variable (or technically you would call it method since we're dealing with an instance here but it's very similar).Example issue: images.sizes doesn't work
Problem description
I am trying to print
images.sizesbut I just get a TypeError. Can someone help me?Code snippet
from nd2reader import ND2Reader with ND2Reader(input) as images: print(images.sizes())Traceback
Traceback (most recent call last): File "/Users/tobiasfrick/miniconda3/envs/ndt/bin/nd2tools", line 33, in <module> sys.exit(load_entry_point('nd2tools', 'console_scripts', 'nd2tools')()) File "/Users/tobiasfrick/PycharmProjects/nd2tools/src/nd2tools/__main__.py", line 70, in main module.main(args) File "/Users/tobiasfrick/PycharmProjects/nd2tools/src/nd2tools/cli/movie.py", line 87, in main print(images.sizes()) TypeError: 'dict' object is not callableEnvironment*
*This could be harder to make yourself if you are new to programming and are not using virtual environments, but if you can include it I would highly recommend it.
conda info active environment : ndt active env location : /Users/tobiasfrick/miniconda3/envs/ndt shell level : 2 user config file : /Users/tobiasfrick/.condarc populated config files : /Users/tobiasfrick/.condarc conda version : 4.10.3 conda-build version : not installed python version : 3.8.10.final.0 virtual packages : __osx=10.16=0 __unix=0=0 __archspec=1=x86_64 base environment : /Users/tobiasfrick/miniconda3 (writable) conda av data dir : /Users/tobiasfrick/miniconda3/etc/conda conda av metadata url : None channel URLs : https://conda.anaconda.org/conda-forge/osx-64 https://conda.anaconda.org/conda-forge/noarch https://conda.anaconda.org/bioconda/osx-64 https://conda.anaconda.org/bioconda/noarch https://repo.anaconda.com/pkgs/main/osx-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/osx-64 https://repo.anaconda.com/pkgs/r/noarch package cache : /Users/tobiasfrick/miniconda3/pkgs /Users/tobiasfrick/.conda/pkgs envs directories : /Users/tobiasfrick/miniconda3/envs /Users/tobiasfrick/.conda/envs platform : osx-64 user-agent : conda/4.10.3 requests/2.25.1 CPython/3.8.10 Darwin/20.6.0 OSX/10.16 UID:GID : 501:20 netrc file : None offline mode : FalseReacted by Ruben VerweijThank you for your report @aknckaan and thanks @FrickTobias for the help.
Could you provide some more information on the problem as @FrickTobias suggested? Is your problem maybe already solved in the meantime?
Reacted by Tobias Frick
I am reading the nd2 file with the library however RGB channel doesn't show up.