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Expansion of MCQUANT with glcm features - #1

Merged
LukasHats merged 15 commits into
masterfrom
expand_quant_L
Aug 7, 2024
Merged

Expansion of MCQUANT with glcm features#1
LukasHats merged 15 commits into
masterfrom
expand_quant_L

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@LukasHats

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Expanded MCQUANT for GLCM and associated graycoprops:

  • Included glcm calculation per cell label and associated graycoprops calculation in the MaskChannel function
  • made use of the --intensity_props argument to determine, whether a user-specified a glcm feature
  • included CLI inputs for angle and distance to calculate the GLCM. Currently limited to 1 angle and 1 distance (otherwise it overblows the CSV result table. The default is set to angle 0 and distance 1 pixel. Included these CLI options in all functions in the main script
  • Adjusted the README, including the function call that was not updated

Things not related to the expanded MCQUANT but observed:

  • Version import does not work
  • Docker build failed

@LukasHats
LukasHats merged commit 3c1aa8b into master Aug 7, 2024
@LukasHats
LukasHats deleted the expand_quant_L branch August 7, 2024 09:01
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2 participants