Extract waveforms to zarr dataset - #4708

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alejoe91 wants to merge 31 commits into

SpikeInterface:mainfrom

alejoe91:extract-waveforms-to-zarr

Commits on Jun 15, 2026

wip: lazy load (analyzer + extensions)
alejoe91
committed
3385cf2

Commits on Jun 19, 2026

todo
alejoe91
committed
121a055

Commits on Jun 24, 2026

feat: move lazy logic to load only
alejoe91
committed
6fdd194
Merge branch 'main' into lazy-extensions
alejoe91
authored
1b82c87
test: add tests for lazy mode
alejoe91
committed
10dfd9f
Merge branch 'lazy-extensions' of github.com:alejoe91/spikeinterface into lazy-extensions
alejoe91
committed
1a1e197
feat: implement ZarrSpikeVector - a memmap like lazy spike vector for zarr
alejoe91
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21a6a59
fix: add lazy spike vector as kwarg
alejoe91
committed
e1a1e75

Commits on Jun 29, 2026

Merge branch 'main' into lazy-extensions
chrishalcrow
authored
6187b31

Commits on Jul 2, 2026

Merge branch 'main' into lazy-extensions
alejoe91
authored
8e1bcf7

Commits on Jul 17, 2026

Commits on Jul 21, 2026

fix: don't copy extension data if sorting_analyzer is lazy
alejoe91
committed
b710917
fix: save=False in compute if analyzer is lazy
alejoe91
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6fa122a
feat: add gather to zarr in node pipeline
alejoe91
committed
09ae857
fix: only delete extension folders if not lazy
alejoe91
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080b17e
feat: GatherToZarr and save extension data in chunks to disk
alejoe91
committed
1b6a82c
fix: solve conflicts
alejoe91
committed
ae1b5e4
fix: conflicts
alejoe91
committed
d7e025b

Commits on Jul 23, 2026

fix: AnalyzerExtension __del__ closes all memmaps refs
alejoe91
committed
60769a5
feat: extract-waveforms directly to zarr datasets
alejoe91
committed
b147765
fix: conflicts
alejoe91
committed
84ea3ab
Merge branch 'gather-to-zarr' into extract-waveforms-to-zarr
alejoe91
committed
03b617c
Merge branch 'main' of github.com:SpikeInterface/spikeinterface into gather-to-zarr
alejoe91
committed
4ad9dab
fix: delete extensions
alejoe91
committed
8ddf404

Commits on Jul 28, 2026

Commits on Sep 22, 2026

fix: conflicts
alejoe91
committed
566a496
fix: use materialize array
alejoe91
committed
22c9b05
fix: expose zarr_target_chunk_bytes
alejoe91
committed
1f3629c
lint
alejoe91
committed
3cbddbf