chore(skills): remove duplicate skills moved to plugins

[baleen37]

Summary

Removes 18 standalone skill files from the skills/ directory that have been migrated to the plugin-based structure. These skills now exist in the everything-agent plugin.

Technical Details

• Deleted 18 files (5,691 lines removed)
• Affected skills:
  • capture-tasks-from-meeting-notes
  • ci-troubleshooting
  • commit
  • generate-status-report
  • opensearch
  • search-company-knowledge
  • spec-to-backlog
  • triage-issue
  • using-git-worktrees

Test Evidence

• check-conflicts.sh passed: branch merges cleanly with origin/main

Breaking Changes

None. Skills are now available via the everything-agent plugin.

Summary by CodeRabbit

• Documentation

  • Removed documentation and reference guides for multiple skills including task capture, CI troubleshooting, commits, status reporting, company knowledge search, specification-to-backlog conversion, issue triage, and git worktrees.

• Tests

  • Removed test suites validating Jira configuration, conflict checking, PR status verification, and skill content requirements.

• Chores

  • Removed supporting utility for query building.

[coderabbitai]

📝 Walkthrough

Walkthrough

This PR removes 13 skill modules including their documentation, reference files, supporting Python utilities, and associated test suites, totaling approximately 6,460 deleted lines. No functional code modifications are present; the change consists entirely of deletions.

Changes

Cohort / File(s)	Summary
Jira Task Management Skills skills/capture-tasks-from-meeting-notes/SKILL.md, skills/capture-tasks-from-meeting-notes/references/action-item-patterns.md, skills/generate-status-report/SKILL.md, skills/generate-status-report/references/jql-patterns.md, skills/generate-status-report/references/report-templates.md, skills/generate-status-report/scripts/jql_builder.py, skills/search-company-knowledge/SKILL.md, skills/spec-to-backlog/SKILL.md, skills/spec-to-backlog/references/breakdown-examples.md, skills/spec-to-backlog/references/epic-templates.md, skills/spec-to-backlog/references/ticket-writing-guide.md, skills/triage-issue/SKILL.md, skills/triage-issue/references/bug-report-templates.md, skills/triage-issue/references/search-patterns.md	Removed comprehensive Jira integration skills documentation, reference materials for task patterns, JQL queries, report templates, ticket writing guidance, breakdown examples, and epic templates. Also removed jql_builder.py utility providing query construction functions (sanitize, build_project_query, build_blocked_query, etc.).
Development Workflow Skills skills/commit/SKILL.md, skills/ci-troubleshooting/SKILL.md, skills/using-git-worktrees/SKILL.md	Deleted workflow documentation for conventional commits, CI troubleshooting procedures (Observe → Cluster → Reproduce → Fix → Validate), and git worktrees setup and safety verification.
Infrastructure/Search Skills skills/opensearch/SKILL.md	Removed OpenSearch connection and querying documentation including common API examples and curl commands.
Test Files tests/jira/jira-specific.bats, tests/skills/test_check_conflicts.bats, tests/skills/test_create_pr_verify_status.bats, tests/skills/test_skill_content.bats	Deleted Bats test suites verifying .mcp.json configuration, SKILL.md existence and validity, check-conflicts script behavior, PR verification workflow, and skill content structure.

Estimated code review effort

🎯 3 (Moderate) | ⏱️ ~20 minutes

Possibly related PRs

• refactor: consolidate plugins to single structure and remove unused modules #493: Overlaps in deletion scope with multiple skill removals and .mcp.json updates, indicating coordinated skill consolidation
• feat: switch MCP tool responses to TOON output #490: Modifies create-pr skill files and tests while main PR deletes test files covering same areas
• refactor: consolidate plugins to hybrid structure with root everything-agent #494: Shares overlapping skill and test file deletions including capture-tasks-from-meeting-notes and plugin removals

Poem

🐰 Thirteen skills bid farewell with grace,
As doc and tests vanish without a trace.
From Jira queries to worktree care,
The codebase breathes with lighter air.
Consolidation hops on, fresh and free! 🌿✨

🚥 Pre-merge checks | ✅ 4

✅ Passed checks (4 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title accurately describes the main change: removal of duplicate skills that have been moved to plugins, matching the PR's core objective.
Docstring Coverage	✅ Passed	No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.
Merge Conflict Detection	✅ Passed	✅ No merge conflicts detected when merging into main

_{✏️ Tip: You can configure your own custom pre-merge checks in the settings.}

✨ Finishing touches

• 📝 Generate docstrings

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Post copyable unit tests in a comment
• Commit unit tests in branch chore/remove-skills-to-plugins

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No actionable comments were generated in the recent review. 🎉

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