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@ccb-hms

Core for Computational Biomedicine

Harvard Medical School

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  1. scDiagnostics scDiagnostics Public

    Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data

    R 17 2

  2. BioPlex BioPlex Public

    R-side access to protein-protein interaction data from Gygi and Harper labs

    R 8 2

  3. nhanes-database nhanes-database Public

    Database facilities for performant working with CDC's National Health and Nutrition Examination Survey (NHANES) data

    R 8 5

  4. MerfishData MerfishData Public

    Collection of public MERFISH datasets

    R 1 2

  5. ai-powered-coding ai-powered-coding Public

    Workshop materials for “AI-Powered Vibe Coding” (CCB, HMS): slides, setup guides, live demo, and hands-on R/Python exercises.

    R 11 3

  6. spatial-workshop-python spatial-workshop-python Public

    Repository for spatial omics workshop in Python with the scverse ecosystem.

    Jupyter Notebook 9

Repositories

Showing 10 of 105 repositories
  • ccb-hms.github.io Public
    ccb-hms/ccb-hms.github.io's past year of commit activity
    HTML 0 0 0 0 Updated Aug 7, 2026
  • LocalAiInferenceService Public

    Resources for working with HMS' local AI inference service

    ccb-hms/LocalAiInferenceService's past year of commit activity
    Shell 0 1 0 0 Updated Jul 29, 2026
  • computervision Public

    The CCB Computer Vision Repository

    ccb-hms/computervision's past year of commit activity
    Jupyter Notebook 2 CC-BY-4.0 0 0 0 Updated Jul 15, 2026
  • scDiagnosticsManuscript Public

    Reproducible analyses for scDiagnostics manuscript.

    ccb-hms/scDiagnosticsManuscript's past year of commit activity
    R 0 MIT 1 0 0 Updated Jul 10, 2026
  • scDiagnostics Public

    Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data

    ccb-hms/scDiagnostics's past year of commit activity
    R 17 2 7 0 Updated Jul 7, 2026
  • scConform Public

    Uncertainty quantification for cell type annotation using conformal inference

    ccb-hms/scConform's past year of commit activity
    R 8 1 2 0 Updated Jul 2, 2026
  • socialmedia Public

    Social media text classification project

    ccb-hms/socialmedia's past year of commit activity
    0 CC-BY-4.0 0 0 0 Updated Jun 28, 2026
  • cms-data-review Public

    Claude skills to review staged data for ResDAC cell suppression policy violations

    ccb-hms/cms-data-review's past year of commit activity
    0 0 0 0 Updated Jun 24, 2026
  • perio-bugs Public

    Database of published microbial signatures of differential abundance in periodontal health and disease (Feres lab, HSDM)

    ccb-hms/perio-bugs's past year of commit activity
    R 1 0 0 0 Updated Jun 11, 2026
  • gwasCatSearch Public

    tooling for semantic search of NHGRI GWAS catalog

    ccb-hms/gwasCatSearch's past year of commit activity
    R 2 CC-BY-4.0 1 0 0 Updated Jun 9, 2026
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