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ExtractHLAread.sh input BAM #78

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ExtractHLAread.sh input BAM#78

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@HugoMananet
HugoMananet
opened on Sep 10, 2026

Hello and thanks for this tool.

If I understand correctly, this tools needs BAM files to first extract HLA reads.
Do i need to generate the BAM files with bowtie or Novoalign for optimal results or can i use BAM files generated by other tools ?

Thanks
Hugo

Activity

  1. wshuai294 commented on Sep 10, 2026

    @wshuai294
    wshuai294
    on Sep 10, 2026 via email
    Collaborator

  2. HugoMananet commented on Sep 11, 2026

    @HugoMananet
    HugoMananet
    on Sep 11, 2026
    Author

    Thanks !

  3. HugoMananet
    closed this as completedon Sep 11, 2026
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