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friendsofstrandseq

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friendsofstrandseq

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mosaicatcher-pipeline mosaicatcher-pipeline Public

Integrated workflow for SV calling from single-cell Strand-seq data

Jupyter Notebook 26 12
ashleys-qc-pipeline ashleys-qc-pipeline Public archive

Strand-Seq Quality Control Pipeline based on ashleys-qc

Jupyter Notebook 4 2

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Showing 10 of 14 repositories

mosaicatcher-pipeline Public
Integrated workflow for SV calling from single-cell Strand-seq data

friendsofstrandseq/mosaicatcher-pipeline's past year of commit activity

Jupyter Notebook 26 MIT 12 2 5 Updated Jun 29, 2026
mosaicatcher-testdata Public

friendsofstrandseq/mosaicatcher-testdata's past year of commit activity

0 0 0 0 Updated Apr 27, 2026
mosaicatcher-docs Public

friendsofstrandseq/mosaicatcher-docs's past year of commit activity

0 0 0 0 Updated Mar 23, 2026
mosaicatcher-referencedata Public

friendsofstrandseq/mosaicatcher-referencedata's past year of commit activity

0 0 0 0 Updated Feb 5, 2026
snakemake-profiles Public
Snakemake profiles

friendsofstrandseq/snakemake-profiles's past year of commit activity

Shell 0 1 0 0 Updated Feb 4, 2026
ashleys-qc-pipeline Public archive
Strand-Seq Quality Control Pipeline based on ashleys-qc

friendsofstrandseq/ashleys-qc-pipeline's past year of commit activity

Jupyter Notebook 4 MIT 2 0 4 Updated Jul 9, 2025
genecore-mosaicatcher Public

friendsofstrandseq/genecore-mosaicatcher's past year of commit activity

0 0 0 0 Updated Oct 24, 2022
ashleys-qc Public
Automated Selection of High quality Libraries for the Extensive analYsis of Strandseq data (ASHLEYS)

friendsofstrandseq/ashleys-qc's past year of commit activity

Python 1 MIT 2 2 1 Updated Oct 20, 2022
mosaicatcher Public
Processing of raw Strand-seq data as part of the SV calling pipeline

friendsofstrandseq/mosaicatcher's past year of commit activity

C++ 4 MIT 6 4 0 Updated Jul 6, 2022
strandsequtils Public
A random collection of scripts around strand-seq data

friendsofstrandseq/strandsequtils's past year of commit activity

R 2 1 0 1 Updated Nov 30, 2021

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