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DOC fix build warnings - #673

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mvdoc merged 8 commits into
gallantlab:mainfrom
kroq-gar78:docs-fix-build-warnings
Aug 20, 2026
Merged

DOC fix build warnings#673
mvdoc merged 8 commits into
gallantlab:mainfrom
kroq-gar78:docs-fix-build-warnings

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@kroq-gar78 kroq-gar78 commented Aug 19, 2026

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Summary

  • Update quickflat autosummary entries for moved functions (composite.*/utils.*)
  • Fix broken :doc: role in the ROI vertices example
  • Fix heading levels in database.rst
  • Add webviewer user guide to the toctree (was orphaned)
  • Fix invalid :module: roles, add missing docs/_static/ dir
  • Fix short title overlines in 4 example docstrings

Test plan

  • make html builds clean; total warning count on this branch dropped from 265 (confirmed via containerized act run of build_docs.yml) to 230, remaining warnings are pre-existing and unrelated to this PR
  • composite.*/utils.* autosummary entries generate and link correctly
  • "Masks" heading renders under "Database" at the correct level
  • userguide/webgl.rst no longer flagged as excluded from any toctree
  • No :module: role errors remain; :mod:cortex.align`` resolves to a real link
  • No "Title overline too short" warnings remain

@kroq-gar78
kroq-gar78 marked this pull request as ready for review August 20, 2026 20:58

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LGTM -- just re-running make html locally to check

@mvdoc
mvdoc merged commit 7bf8ba2 into gallantlab:main Aug 20, 2026
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mvdoc added a commit to mvdoc/pycortex that referenced this pull request Aug 21, 2026
* origin/main: (44 commits)
  WebGL viewer: make opacity slider and `o` toggle work for Vertex data (gallantlab#685)
  docs(mapper): add get_mapper docstring (gallantlab#686)
  ENH add types for dataset classes (BrainData, Dataview, ...) (gallantlab#669)
  Allow viewer data to be updated in real-time (gallantlab#675)
  FIX: fix minor bug in handling of vmin and vmax when not specified (replaces old cast code) (gallantlab#681)
  docs: correct the sulcus install instructions, which destroyed existing sulci (gallantlab#657)
  WebGL viewer: fix help-menu shortcut display (gallantlab#642)
  MNT ignore docs build outputs written into the source tree (gallantlab#680)
  DOC fix build warnings (gallantlab#673)
  webgl: bind an OS-assigned ephemeral port for the viewer server (gallantlab#676)
  ENH add types for Database and transforms (gallantlab#667)
  MNT remove obsolete Python 2 syntax, add some types (gallantlab#666)
  Bump JamesIves/github-pages-deploy-action from 4.8.0 to 4.9.0 (gallantlab#671)
  Bump actions/setup-python from 6 to 7 (gallantlab#661)
  docs: document in-browser sulcus drawing (pycortex-roidraw v0.4.0) (gallantlab#656)
  ENH Pure-python surf2surf matrix (direct nnfr construction) (gallantlab#651)
  Bump actions/cache from 5 to 6 (gallantlab#654)
  webgl: fix overlay/label async texture-bake races (complete) (gallantlab#653)
  docs: add in-browser ROI drawing (pycortex-roidraw) page (gallantlab#652)
  FIX: update BuWtRd and BuWtRd_alpha colormaps to have pure white at center, more sensible for biphasic data (gallantlab#649)
  ...

# Conflicts:
#	cortex/quickflat/composite.py
#	cortex/utils.py
#	cortex/webgl/resources/js/shaderlib.js
#	cortex/webgl/view.py
alexhuth pushed a commit that referenced this pull request Aug 21, 2026
* docs: fix compositing functions, re-order entries

* docs: uncomment dataset page in toctree

* docs: fix :doc: role in ROI vertices example

* docs: fix section levels so Masks heading renders

* docs: add orphaned webgl user guide page to toctree

docs/userguide/webgl.rst wasn't linked from any toctree, so it never
appeared in the built docs even though roidraw.rst treats it as a
prerequisite.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>

* docs: fix invalid :module: roles, add missing _static dir

* docs: fix short title overlines in example gallery

* docs: re-comment dataset page in toctree

---------

Co-authored-by: Aditya Vaidya <kroq-gar78@users.noreply.github.com>
Co-authored-by: Claude Sonnet 5 <noreply@anthropic.com>
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2 participants