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LiNo over TCP: text and binary links notation protocols, remote links store and binary store archive in Rust and C# - #106

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@konard konard commented Oct 4, 2026 •

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Closes #105.

LiNo substitution queries (create, read, update and delete) now run over TCP in both ports. There are two interchangeable protocols:

  • a UTF-8 text protocol;
  • binary links notation, whose reference width grows with the number of links.

Rust and C# produce identical bytes, and either port's client works with either port's server. Following the review of 2026-10-04, the PR also adds a remote store (RemoteLinks), a binary store archive, a dependency-freshness check, full protocol test coverage and upstream bug reports.

The full analysis is in docs/case-studies/issue-105. It covers the requirements, prior art, the wire format, golden vectors, sizes, coverage, upstream findings and the remaining limits. The format specification is docs/protocol/binary-links-notation.md.

Try it

clink --db db.links --serve 127.0.0.1:7777                  # terminal 1
clink --connect 127.0.0.1:7777 '() ((1 1))'                 # text   -> () ((1: 1 1))
clink --connect 127.0.0.1:7777 --protocol binary --external-references --arity 1.. --packed-widths '() ((2 2))'
clink --connect 127.0.0.1:7777                              # list   -> (1: 1 1) (2: 2 2)
clink --db db.links --export-binary db.bin                  # whole store, names included
clink --db copy.links --import-binary db.bin --after
./examples/tcp/run-interop.sh            # Rust server + C# client, text and every binary option
./examples/tcp/run-interop.sh csharp     # C# server + Rust client
./examples/archive/run-interop.sh        # archive exported by one port, imported by the other

What changed

Protocols (rust/src/protocol/, csharp/…Library/Protocol/)

Requirement Implementation
UTF-8 text links notation TextLinoProtocol: canonical LiNo. A message ends with a line holding ., with dots doubled as in SMTP, so nc works
Binary protocol carrying the number of links BinaryLinoProtocol / LinksPacket. The header is 0x10 | flags; a packet is sections of links that share one reference width and one arity range
8 / 16 / 32 / 64-bit references depending on the number of links Uniform width by default (the tier of the highest address). --packed-widths gives each section the narrowest width it needs, and is never larger than uniform output
Numbers defined in links, or external references Default: (Number unary(n)) and (String code-points…). --external-references encodes values as Platform.Data.Hybrid<T>
Variable-length links after the doublets --arity 2..3 / 1..: links of any allowed length, addressed after the fixed ones
A decorator that can be switched with the text protocol Both implement LinoProtocol / ILinoProtocol. LinoConnection decorates any stream with either one. The server detects the protocol per message and replies in kind
All options optional BinaryLinoOptions: every option is off by default. --protocol text|binary restricts a server

The binary links notation is reusable outside TCP (the store archive uses it). Shared golden vectors (docs/protocol/binary-links-notation-vectors.txt) pin the format: 84 documents × 12 option sets, plus raw packets, asserted byte for byte in both ports.

Server, client, remote store, CLI

  • LinksServer / LinksClient.
    • The empty request lists every link.
    • A query replies (before) (after) like --changes.
    • A failure replies (error: 'message').
    • A malformed message gets an error, and then the connection closes.
    • A server that is stopping answers (error: 'server is shutting down') and never touches the store again.
    • DecodeLimits bound untrusted input.
  • RemoteLinks is a links-interface decorator. It implements INamedTypesLinks<uint> (C#) and Links + Doublets + NamedTypeLinks (Rust). Code written against those interfaces, including the query processors, switches from a local file to a server by swapping one value. Each call is one LinksOperation document ((count: …), (update: …), (set-name: …), …). Both suites replay the same recorded conversation (docs/protocol/links-operations.txt).
  • Store archive: --export-binary / --import-binary write and read the whole store (every address and hole, plus names) as binary links notation. The bytes are identical across ports.
  • --serve, --connect, --protocol, --external-references, --arity and --packed-widths work the same in both CLIs.

Fixes found while proving CRUD end to end (each with a test)

  • --changes creation reports, in both ports.
    • Every created link is reported once, as () ((name: name name)).
    • Redefining a name updates the link in place.
    • Reference validation predicts the addresses the store actually reuses.
  • C#: an update merging into an existing doublet now re-points the usages, as Rust does, instead of blanking them (Data.Doublets#515).
  • C#: a server shut down right after accepting a connection no longer crashes.
  • AddressTier / address_tier reject an address beyond the internal range instead of silently returning width 8.
  • The wasm build compiles again. The browser workbench now runs on the new LinkStorage::in_memory, the CLI's own store without a file.
  • links-notation 0.16.1 → 0.22.0. The old version parsed nested input in exponential time (links-notation#314), so a few bytes could stall a server thread. A linear-time regression test was added.
  • CodeQL js/incomplete-sanitization in the dependency script.

Latest dependencies, enforced by CI

The new Dependencies workflow runs on every PR, on main and daily. It fails while any Cargo crate, lock entry, NuGet package, npm package, GitHub Action, Node.js or .NET version is behind its latest release. Dependabot opens the bumps.

Reported upstream

  • links-queue #51: a second binary links notation.
  • links-notation #325: a proposal for one shared spec.
  • doublets-rs #62–#67.
  • mem-rs #36.
  • Data.Doublets #517–#521, plus a repro on #338.

Each issue has a minimal repro, and §6.5 of the case study lists how this repo steers around each one.

Tests and coverage

100% of lines in rust/src/protocol/ and csharp/…Library/Protocol/ are covered. Measured with cargo llvm-cov and coverlet; the commands are in the case study, §5.

  • Every client and server, under every protocol, is tested for every CRUD call.
  • Malformed-input tests assert the exact error. A substring match had let several tests pass on the wrong error.
  • Code that no test could reach was removed rather than excluded.
Rust C#
protocol_packet_tests (27) BinaryLinksNotationTests (17), LinoProtocolCodecTests (11)
protocol_tcp_tests (11), cli_tcp_tests (4) LinksServerTests (15), CliTcpIntegrationTests (5)
remote_links_tests (14) RemoteLinksTests (16)
store_archive_tests (16) StoreArchiveTests (11), CliStoreArchiveTests (3)

The C# counts are test methods; many are theories. Full C# suite: 440 passed.

Local checks, all passing:

  • cargo fmt --check
  • cargo clippy --all-targets -D warnings
  • cargo test
  • dotnet format --verify-no-changes
  • dotnet build -c Release
  • dotnet test
  • check-file-size
  • npm run test:js
  • npm run test:wasm
  • node --test for the dependency script

Release notes

  • Rust rust/changelog.d/2026100{4,5}_*_issue_105_*.md: TCP protocols (minor), creation reports, remote links, store archive, latest dependencies, browser storage, protocol coverage.
  • C# csharp/.changeset/issue-105-*.md: the same topics, plus merge re-pointing usages.
  • Docs:
    • README.md
    • docs/ARCHITECTURE.md
    • docs/HOW-IT-WORKS.md
    • docs/REQUIREMENTS.md
    • docs/protocol/
    • the case study
    • the rust/README.md and csharp/README.md READMEs

Remaining limits

  • No authentication or TLS: bind to 127.0.0.1 or tunnel the connection.
  • Requests are serialized by the store lock.
  • A reply is one message, with no streaming.

The case study lists next steps for each of these.

Adding .gitkeep for PR creation (default mode).
This file will be removed when the task is complete.

Issue: #105
@konard konard self-assigned this Oct 4, 2026
konard added 13 commits October 4, 2026 17:54
Add the protocol module for issue #105: a dot-stuffed UTF-8 text
protocol and a binary links packet whose header carries the link count
and whose reference width grows with it (8/16/32/64 bits). External
(Hybrid) references, the sequence section and progressive widths are
optional and independently switchable. Includes golden vectors and
hostile-input limits.
LinksServer detects the protocol of every message and replies in kind,
executing requests serially against the store; LinksClient runs
substitution queries over any LinoProtocol. Replies mirror
clink --changes and the empty request reads the whole store.
clink --serve <addr> exposes a database over TCP, accepting text and
binary messages; clink --connect <addr> sends a query with the chosen
protocol and binary options and prints the reply.
Port of the Rust protocol module: LinksPacket codec, LiNo <-> packet
mapping with optional external references, sequence section and
progressive widths, dot-stuffed text framing, protocol detection and a
LinksServer/LinksClient pair that run substitution queries over TCP.
…server

links-notation 0.16.1 parsed nested groups in time exponential in the
depth (link-foundation/links-notation#314, fixed in 0.21.3): a 90-byte
message nested 40 deep kept a server thread busy for minutes. 0.22.0 is
linear and rejects nesting deeper than 64.

0.22.0 wraps a lone reference in a group in both ports (`a` parses as
`(a)`), so the Rust parse_document now removes that wrapper, as C#
already did. Golden vectors are unchanged.

Deep-nesting regression tests are in the Rust packet tests and the C#
codec tests.
… golden vectors

Also add lino-structure-probe examples in C# and Rust that print how each
links-notation port structures LiNo text, for checking that they agree.
Mirrors rust/tests/protocol_tcp_tests.rs: CRUD over text and all eight
binary option sets, identical replies across protocols, remote errors,
a raw CRLF text session, malformed headers, protocol restriction,
concurrent clients and shutdown.
The C# CLI now serves a database over TCP and queries a served one,
matching the Rust options: --serve, --connect, --protocol and the binary
decorators --external-references, --sequences and --progressive-widths.
examples/tcp/run-interop.sh drives a server written in one language with
a client written in the other.
@konard konard changed the title [WIP] LINO API or LINKQL over TCP LiNo substitution operations over TCP: text and binary protocols in Rust and C# Oct 4, 2026
@konard
konard marked this pull request as ready for review October 4, 2026 19:00
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konard commented Oct 4, 2026

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Working session summary

Issue #105 is done: both the Rust and C# versions can now serve a links database over TCP and run LiNo queries against it. PR #106 is marked ready for review. All CI checks pass on the latest commit, the full test suites pass locally, and a Rust server talking to a C# client works in both directions.

How it works:

  • clink --serve host:port starts a server and clink --connect host:port sends it queries. The same flags work in both versions.
  • There are two protocols:
  - **Text:** plain UTF-8 links notation, one message per request, ending with a line holding a single `.`.
  - **Binary:** a header with the number of links, then fixed-size links whose references are 8, 16, 32 or 64 bits depending on how many links there are.
- The server works out which protocol each message uses from its first byte and answers in the same one.
- The binary options are separate switches, all off by default:
  - `--external-references` sends numbers as plain values instead of defining them as links.
  - `--sequences` adds variable-length sequences after the fixed links.
  - `--progressive-widths` lets the reference size grow link
Rest of the working session summary (1 KB)
 by link instead of using one size for the whole packet.
- Both versions produce identical bytes, and the tests in each language check the same expected byte sequences.
- To try it, run `examples/tcp/run-interop.sh`, or add the `csharp` argument for the C# server with the Rust client.
```

**A problem I found and fixed:** the links-notation version both versions used (0.16.1) took exponential time to parse nested input. A few dozen bytes like `((((…))))` could stall a server thread for minutes. This is a known upstream bug (links-notation#314), fixed in 0.21.3. I upgraded both versions to 0.22.0 and added a test in each language that parsing stays fast and very deep input is rejected.

**Things you might trip over:**
- **No security:** there is no authentication or TLS, so bind the server to `127.0.0.1` or tunnel it.
- **One query at a time:** requests are handled one after another.
- **No streaming:** each reply is a single message.
- **Named links on the C# server:** creating a named link like `() ((a: a a))` gets an empty reply, though the link is created. This comes from the existing C# query code, not from this PR, and I didn't change it.
- **Cascading deletes:** deleting a link also deletes the links that refer to it, in both versions. The tests expect this.

The design, the requirements mapping and suggested next steps are in `docs/case-studies/issue-105/README.md`. The PR also includes release notes for both packages (minor version bumps) and updated READMEs and docs.

This summary was automatically extracted from the AI working session output.

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🤖 Solution Draft Log

This log file contains the complete execution trace of the AI solution draft process.

💰 Cost: $17.640115

📊 Context and tokens usage:

Claude Opus 5.5: (8 sub-sessions)

  1. 116.8K / 1M (12%) input tokens, 40.0K / 128K (31%) output tokens
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  5. 116.9K / 1M (12%) input tokens, 35.2K / 128K (27%) output tokens
  6. 116.4K / 1M (12%) input tokens, 34.0K / 128K (27%) output tokens
  7. 114.9K / 1M (11%) input tokens, 31.6K / 128K (25%) output tokens
  8. 35.5K / 1M (4%) input tokens, 1.8K / 128K (1%) output tokens

Total: (19.7K new + 823.3K cache writes + 21.8M cache reads) input tokens, 344.3K output tokens, $17.601906 cost

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Total: 33.3K input tokens, 984 output tokens, $0.038209 cost

🤖 Models used:

  • Tool: Anthropic Claude Code
  • Requested: opus (claude-opus-5)
  • Thinking level: high (~23999 tokens)
  • Main model: Claude Opus 5.5 (claude-opus-5-5)
  • Additional models:
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📎 Log file uploaded as Gist (10207KB)


Now working session is ended, feel free to review and add any feedback on the solution draft.

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konard commented Oct 4, 2026

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✅ Ready to merge

This pull request is now ready to be merged:

  • All CI checks have passed
  • No merge conflicts
  • No pending changes

Monitored by hive-mind with --auto-restart-until-mergeable flag

@konard

konard commented Oct 4, 2026 •

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We need to make sure that links remote client is implemented as decorator with ILinks interface in both C# and Rust, so for the end user it is easy to swap local direct usage of the data store with remote data store.

Double check that everything done perfectly, and everything is covered with 100% tests, with guarantee both client and server of all protocols work perfectly for all CRUD operations as described in our original docs of substitution operation.

Double check the docs are perfectly expressive, no contradictions of the code, and polish all the code in the entire repository codebase, so it is as perfect as symmetrical as logical and correct as possible, if you see any false positives, false negatives, warnings or errors fix them all. Everything is wrong or has errors should be proven with tests, so no regressions in the future.

Try to make everything as perfect as possible in all supported languages.

Make sure we reported issues to all potential dependencies repositories from our organizations, so we can also improve codebase there later.

And make sure exactly all dependencies in the codebase are updated to all latest versions, and we guarantee with CI/CD it will be always the case.

We should make sure we do as less code duplication as possible. The code is fully self explanatory, if we need comments we might replace them with better names for variables and functions.

Also the packet format of binary links notation should be reusable, we may also put it to github.com/link-foundation/links-notation make binary format fully configurable and so on. Like which fixed length links we should support, by default it is range from 2 to 2 inclusive, yet we should also allow 1 to infinity, test carefully with 2 - 3 (duplets and triples), and variable length links.

So it uses as little disk space as possible and has good algorithms for packing links in such a way so we minimize empty space in the data format, for example we should try to fit as much links to 256 block as possible, so they reference only each other, and all others links reference at at least one link with bigger addresses and so on.

We first fully implement it here, and later propose copy/migrate/expand on implementation in github.com/link-foundation/links-notation so we will have not only text version of universal links notation, but also universal standard for binary links notation, that can be used as data archives, binary messaging protocols and so on.

It should be possible also to fully import and export links from the data store in and out of binary links notation.

Behaviour differences noted, not changed

These existed before this PR. The protocols carry whatever the query processors return.

The C# processor does not report the creation of a named link as a change, so a C# server replies with nothing to () ((a: a a)). The link is still created.
Deleting a link also deletes the links that refer to it, in both ports.

All previous issues must be solved, that we noticed, so we have a perfect state of codebase which is carefully 100% covered with tests.

@konard
konard marked this pull request as draft October 4, 2026 23:23
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🤖 AI Work Session Started

Starting automated work session at 2026-10-04T23:23:40.556Z

The PR has been converted to draft mode while work is in progress.

This comment marks the beginning of an AI work session. Please wait for the session to finish, and provide your feedback.

Runtime: solve v2.33.11 · tool claude · model opus · task image konard/hive-mind-dind:2.33.11@sha256:999480a8daefeffc7d0ca8ca376df0252eba6a57fa7c45ab2e09b35b692b0288

konard added 7 commits October 4, 2026 23:39
NamedTypeLinks gains update_observed next to delete_observed; every
layer (LinkStorage, NamedTypesDecorator, transactions, version control,
persistent transformations, RemoteLinks) forwards the observer, so an
update that merges into an existing doublet reports the deletion of the
updated link, exactly as AdvancedMixedQueryProcessor does in C#. The
server's update operation returns every change, and RemoteLinks is
tested against a local store over every protocol.
A create followed by a match of the same link reported both
'(1: 1 1) -> (1: 1 1)' and '() -> (1: 1 1)'. Both simplifiers now keep an
unchanged pair only when no other change touches that link.
The simplifier walked a graph of link states in which the null link was
a single node, so every deletion chained into every creation: deleting
link 3 and creating link 4 was reported as '(3: 3 3) -> (4: 4 4)', and
C# reported both '((1: 1 1)) ((1: 3 3))' and '() ((1: 3 3))' when
'((1: 1 1)) ((3 3))' deleted and recreated address 1.

Both ports now reduce the raw steps of each address to (first before,
last after), drop links created and deleted within the query, and keep
ordering by the after state. The C# tests that were commented out
describe exactly this behaviour and are enabled again; the debug-only
test now asserts its result.
… the store

Named point links and leaves created on the way were not reported, or were
reported as an empty link that was filled in later. Every creation is now
reported once as the link it ends up being, in both ports. Creating under an
existing name redefines that link, and a new name for an existing doublet
names it instead of copying it.

Reference validation assumed that a new link gets the lowest free address.
Both stores reuse the address freed last first, so a reference to a freed
address the query never refills was accepted and then silently dropped, and
C# EnsureCreated threw on a freed address above its target. The validator
now asks the store for the next addresses by creating and deleting them in
reverse, and repeats the plan until auto-created references settle.
… stack trace

A missing reference or a malformed query ended clink with an unhandled
exception and its stack trace. Both are now printed as 'Error: Query error:'
or 'Error: Parse error:' like the Rust clink, with the stack trace kept for
--trace. Tests in both ports pin the output, and the CLI tests share one
helper that runs the built clink.
… them

An update into an existing doublet merges into it. Platform.Data.Doublets
0.18.1 MergeUsages builds new Link<T>(a, b), which is (index: a, source: b,
target: 0), so C# left (1: 1 0) where Rust re-points the usage to (1: 1 1)
(linksplatform/Data.Doublets#515). Stores are now composed with
DecorateWithAutomaticUniquenessAndUsagesRepointing(), whose
LinksUniquenessAndUsagesRepointingResolver re-points both halves of each
usage in one update.

The issue-100 parity harness drops its last exemption: 41 scenarios agree.
konard added 3 commits October 5, 2026 02:45
It never reads or writes the file system: save, flush and reload write
nothing, and has_external_changes is always false. The browser has no
file system (fs::metadata returns Unsupported on wasm32), so this is the
store the WebAssembly workbench needs.
The WebAssembly crate stopped compiling (E0046) when NamedTypeLinks began
requiring update_observed and delete_observed, which failed the
WebAssembly and Docs workflows. Instead of growing its own simplified
copy of the store, the workbench now uses the CLI's LinkStorage kept in
memory, so deletes cascade to usages and updates merge into an existing
pair exactly as in the CLI. Tests pin both behaviours natively and on
wasm32.
This was referenced Oct 5, 2026
konard added 6 commits October 5, 2026 03:11
…t the exact error

- AddressTier throws for an address beyond the internal range
- drop the unused LinoFormat.IsReference
- a stopping server answers 'server is shutting down' instead of hanging up
- trace 'client hung up' on a clean close
- three malformed-packet cases passed for the wrong reason; every case now checks its detail
…ct error

- address_tier fails as unencodable beyond the internal range
- a stopping server replies (error: "server is shutting down") to a read request
- operation errors print links in LiNo, not Debug syntax
- width_from_code is total over two-bit codes; dead fallbacks removed
@konard konard changed the title LiNo substitution operations over TCP: text and binary protocols in Rust and C# LiNo over TCP: text and binary links notation protocols, remote links store and binary store archive in Rust and C# Oct 5, 2026
@konard
konard marked this pull request as ready for review October 5, 2026 04:03
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konard commented Oct 5, 2026

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Working session summary

The tests now run every line of the protocol code in both ports, and PR #106 is marked ready for review: #106. All 7 CI workflows pass on the latest commit (6417179). The only jobs not run are release jobs that are skipped on pull requests.

Coverage. cargo llvm-cov reports 100% line coverage for every file in rust/src/protocol/. Coverlet reports 100% for every file in the C# Protocol/ folder. One small gap remains in Rust: a fallback in server.rs:322 that formats an unnamed reference as its number never runs in one compiled copy of that function. The line itself is covered.

Changes in this round:

  • Exact errors. Malformed-input tests now check the exact error text. Matching only part of the text had let a few tests pass on the wrong error, and four of their expected messages were wrong.
  • Unreachable code. Code no test could reach was removed rather than excluded from coverage. One example is a C# branch for a client accepted while the server stops. Without it, that client's connection thread still sees the server is stopping and closes it.
  • Behaviour fixes:
    • An address too large to encode is now re
Rest of the working session summary (1 KB)
jected instead of silently getting width 8.
  - A Rust server that is stopping now replies `(error: "server is shutting down")` instead of hanging up, and never touches the store again.
  - Malformed-request errors now show the link in LiNo rather than Rust debug syntax.
- **New tests** cover a stopped server, wrongly shaped `name`/`link` replies, errors reading or writing an archive file, and `(a:)`. That last one is a links-notation quirk that I documented rather than changed: `(a:)` reads back as the plain reference `a`.
- **CodeQL warning fixed.** The dependency-check script now escapes every `/` in an npm package name, not just the first.
- **Docs.** The case study has a new Coverage section with the commands to reproduce the numbers. The PR title and description are rewritten for the current state: remote store, binary archive, dependency CI, upstream issues and coverage.

Before pushing, local checks all passed:
- **Rust:** `cargo fmt --check`, `cargo clippy --all-targets -D warnings` and `cargo test`.
- **C#:** `dotnet format` and a Release build, plus 440 tests.
- **Other:** the file-size check and the JS and wasm tests.

The CodeQL alert page itself still shows no "fixed" state, though the latest Security scan passed. It probably updates when the PR merges.

There are no new review comments on the issue or the PR, and `main` is already merged into the branch.

This summary was automatically extracted from the AI working session output.

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🤖 Solution Draft Log

This log file contains the complete execution trace of the AI solution draft process.

💰 Cost: $63.452679

📊 Context and tokens usage:

Claude Opus 5.5: (28 sub-sessions)

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  25. 115.8K / 1M (12%) input tokens, 32.9K / 128K (26%) output tokens
  26. 116.9K / 1M (12%) input tokens, 35.5K / 128K (28%) output tokens
  27. 116.3K / 1M (12%) input tokens, 37.5K / 128K (29%) output tokens
  28. 77.3K / 1M (8%) input tokens, 15.4K / 128K (12%) output tokens

Total: (127.5K new + 3.1M cache writes + 85.3M cache reads) input tokens, 1.1M output tokens, $63.452679 cost

🤖 Models used:

  • Tool: Anthropic Claude Code
  • Requested: opus (claude-opus-5)
  • Thinking level: high (~23999 tokens)
  • Model: Claude Opus 5.5 (claude-opus-5-5)

📎 Log file uploaded as Repository (40320KB)


Now working session is ended, feel free to review and add any feedback on the solution draft.

@konard

konard commented Oct 5, 2026

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✅ Ready to merge

This pull request is now ready to be merged:

  • All CI checks have passed
  • No merge conflicts
  • No pending changes

Monitored by hive-mind with --auto-restart-until-mergeable flag

@konard
konard merged commit 429757a into main Oct 5, 2026
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LINO API or LINKQL over TCP

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