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1. vcf2maf vcf2maf Public

   Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

   Perl 418 221

2. facets facets Public

   Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

   R 163 70

3. ngs-filters ngs-filters Public

   Filters for false-positive mutation calls in NGS

   R 34 21

4. iCallSV iCallSV Public

   Forked from rhshah/iCallSV

   A Framework to call Structural Variants from NGS based datasets

   Python 3 1

5. mutation-signatures mutation-signatures Public

   Create mutation signatures from MAF's, and decompose them into Stratton signatures

   R 61 30