Skip to content

Pull requests: nf-core/modules

New pull request New
179 Open 8,434 Closed
179 Open 8,434 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Updated opt - (offtarget probe tracker) size/l
#11795 opened May 31, 2026 by khersameesh24 Contributor Loading…
17 tasks
1
update Proseg size/l
#11793 opened May 30, 2026 by khersameesh24 Contributor Loading…
9 tasks
1
bump samplesheet-parser to v1.3.0 for latest features
#11792 opened May 30, 2026 by chaitanyakasaraneni Contributor Loading…
5 of 17 tasks
New module baysor size/l
#11790 opened May 29, 2026 by khersameesh24 Contributor Loading…
4 tasks
1
Update to topic htseq/count
#11789 opened May 29, 2026 by LouisLeNezet Contributor Loading…
17 tasks
1
@LouisLeNezet
Add new module: nanomonsv/get Ready for Review
#11788 opened May 29, 2026 by manascripts Member Loading…
10 of 17 tasks
Add varnet (https://github.com/skandlab/VarNet)
#11787 opened May 29, 2026 by kiranchari Loading…
1 task
Add regenie/runl1 module
#11768 opened May 26, 2026 by lyh970817 Contributor • Draft
13 of 14 tasks
Add regenie/runl0 module
#11767 opened May 26, 2026 by lyh970817 Contributor • Draft
13 of 14 tasks
feat: support task.ext.args in sentieon/gvcftyper size/xs
#11763 opened May 26, 2026 by nicorap Contributor Loading…
11 of 14 tasks
2
Upgrade environment schema to support additional scenarios
#11758 opened May 25, 2026 by toniher Member Loading…
Add dotseq/dotseq
#11742 opened May 21, 2026 by pinin4fjords Member Loading…
7 tasks done
feat(custom): orfnormalise + orfmerge modules + orftable_fasta_gtf_buildorfcatalogue subworkflow
#11740 opened May 21, 2026 by pinin4fjords Member Loading…
5 tasks done
1
Add regenie/splitl0 module
#11739 opened May 21, 2026 by lyh970817 Contributor • Draft
13 of 14 tasks
feat(vcontact3): add vcontact3/prepareddatabases module
#11738 opened May 21, 2026 by olawal1001 • Draft
17 tasks
13
Add new module: savana/run Ready for Review
#11737 opened May 21, 2026 by manascripts Member Loading…
10 of 13 tasks
7
new module: custom/bed12codonpositions Ready for Review
#11733 opened May 21, 2026 by pinin4fjords Member Loading…
4 tasks done
1
Update phasing and imputation sbwf
#11731 opened May 21, 2026 by LouisLeNezet Contributor Loading…
17 tasks
@LouisLeNezet
feat(simpleaf): add simpleaf/multiplexquant module
#11724 opened May 20, 2026 by an-altosian Contributor Loading…
3 tasks
5
Add new module: octopusv/stat Ready for Review
#11719 opened May 20, 2026 by manascripts Member Loading…
11 of 13 tasks
9
add anvi-gen-contigs-database module Ready for Review
#11713 opened May 20, 2026 by telatin Contributor Loading…
12 of 17 tasks
1
Mobsuite typer
#11664 opened May 17, 2026 by jfy133 Member Loading…
17 tasks
1
New module: GRIMER
#11663 opened May 17, 2026 by Jonahnki Loading…
5 tasks done
1
27
Add new module: flumut size/m
#11662 opened May 17, 2026 by EdoardoGiussani Loading…
9 of 11 tasks
1
2
Test: Phold
#11661 opened May 17, 2026 by anna-parker • Draft
17 tasks
3
ProTip! Exclude everything labeled bug with -label:bug.