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redesign nClass so that compiled inherits from uncompiled, C components are contained in private, and packaged names can be managed #125

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Merged
perrydv merged 15 commits into from
Mar 1, 2026
Merged

redesign nClass so that compiled inherits from uncompiled, C components are contained in private, and packaged names can be managed #125

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ce867d5
initial redesign of nClass to hold a private Cpublic_obj and use it b…
perrydv Dec 17, 2025
9a4ca0b
Add basic nClass_uncompiled tests
perrydv Dec 17, 2025
abc2378
major work towards redesigning nClass generation and hierarchy
perrydv Jan 7, 2026
b2fc9f1
fix C++ handling (Exporter and generic interface set) of new nClass s…
perrydv Jan 10, 2026
ec5db1d
close to finished with updated class naming issues within packages
perrydv Feb 25, 2026
b3475b9
updated tests after new packingNames and nCompile naming schemes
perrydv Feb 26, 2026
2c7c276
update predefineds. fix nimbleModels. fix package class generation wi…
perrydv Feb 27, 2026
ad69492
fix StridedTensorMap operator() for single index
perrydv Feb 27, 2026
768257b
drill into cpp_tests crash
perrydv Feb 27, 2026
5316343
fix yaml commenting-out of R code
perrydv Feb 27, 2026
3d68769
stupid emacs-created typo
perrydv Feb 27, 2026
0f6892e
test trials
perrydv Feb 27, 2026
3734d10
give each case in test-argumentPassing unique package naming
perrydv Feb 27, 2026
9f679bf
Fix test-tensorCreation for old style
perrydv Feb 28, 2026
250b0db
Merge branch 'main' into nClass-redesign
perrydv Mar 1, 2026
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4 changes: 2 additions & 2 deletions .github/workflows/test-all.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -41,7 +41,7 @@ jobs:
run: R -q -e 'sessionInfo()'
- name: Install nimbleModel
run: R -q -e 'remotes::install_github("https://github.com/perrydv/nimbleModel", subdir="nimbleModel", auth_token=Sys.getenv("GITHUB_TOKEN_NIMBLEMODEL"))'
env:
env:
GITHUB_TOKEN_NIMBLEMODEL: ${{ secrets.GH_NM_PAT }}
- name: Package Dependencies
run: R -q -e 'remotes::install_deps("nCompiler", dependencies=TRUE)'
Expand All @@ -56,7 +56,7 @@ jobs:
library(nCompiler)
testthat::test_dir("nCompiler/tests/testthat/uncompiled_tests", reporter = "summary")
testthat::test_dir("nCompiler/tests/testthat/nCompile_tests", reporter = "summary")
testthat::test_dir("nCompiler/tests/testthat/cpp_tests", reporter = "summary")
testthat::test_dir("nCompiler/tests/testthat/cpp_tests", reporter = "location")
shell: Rscript {0}

test-nCompile-features:
Expand Down
6 changes: 6 additions & 0 deletions nCompiler/NAMESPACE
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Expand Up @@ -12,8 +12,12 @@ export(calcInstr_nClass)
export(calcInstrList_nClass)
export(cloglog)
export(check_Rcpp_for_nCompiler)
export(compileInfo)
export(`compileInfo<-`)
export(compileNimble)
export(connect_nClass_envs)
export(cpp_nCompiler)
export(CpubClass)
export(createRef)
export(createBlockRef)
export(createRefInfoIntoC)
Expand Down Expand Up @@ -49,6 +53,7 @@ export(getType)
export(icloglog)
export(ilogit)
export(iprobit)
export(isCNC)
export(isCompiledNCgenerator)
export(isDiscrete)
export(isNC)
Expand Down Expand Up @@ -130,6 +135,7 @@ export(setup_wrt)
export(square)
export(test_predefined)
export(to_full_interface)
export(to_generic_interface)
export(value)
export("value<-")
export(writeCode)
Expand Down
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