Issues

• convert dump.txt to kmc database

  refresh-bio/KMC#251 · Filter by author sashulkaSh opened on May 15, 2026
  4

• KMC multi-samples kmer count

  refresh-bio/KMC#249 · Filter by author SunJJ230120 opened on Jul 3, 2025

• KMC stay silent when output file is not created due to memory problem

  refresh-bio/KMC#248 · Filter by author cmonat opened on Jun 3, 2025
  1

• KMC froze at Stage 1: 2%

  refresh-bio/KMC#242 · Filter by author zhangrengang opened on Sep 30, 2024

• incompatibility with tab character in line1 of FASTQ

  refresh-bio/KMC#241 · Filter by author iorga opened on Sep 15, 2024
  1

• smudge_pairs: command not found Error

  refresh-bio/KMC#240 · Filter by author setshabaTaukobong opened on Aug 19, 2024
  2

• v3.2.4 stalls on very large dataset but v3.2.1 does not

  refresh-bio/KMC#238 · Filter by author peter-kanvas opened on Jul 4, 2024
  2

• Storing k-mers without counters

  refresh-bio/KMC#236 · Filter by author peter-kanvas opened on Jun 19, 2024
  2

• Dump with empty output

  refresh-bio/KMC#234 · Filter by author MagpiePKU opened on May 26, 2024
  2

• munmap_chunk(): invalid pointer on ubam file - KMC crashes on BAM with long reads

  bug
  refresh-bio/KMC#230 · Filter by author tbenavi1 opened on Feb 29, 2024
  4

• kmc_tools simple intersect & union, not considering reverse complement?

  refresh-bio/KMC#227 · Filter by author zhaotao1987 opened on Jan 13, 2024
  3

• Empty output

  refresh-bio/KMC#223 · Filter by author mesti90 opened on Oct 9, 2023
  2

• kmc_tools filter does not accept large FASTA input

  refresh-bio/KMC#221 · Filter by author mscharmann opened on Sep 8, 2023
  1

• Python 3.11 support

  refresh-bio/KMC#216 · Filter by author tbenavi1 opened on Jun 6, 2023

• KMC yields an error on fixed width fasta files

  refresh-bio/KMC#214 · Filter by author mesti90 opened on Apr 26, 2023
  4

• Space shortage for output not reported

  refresh-bio/KMC#211 · Filter by author jamshed opened on Mar 2, 2023

• kmc stuck at Stage 1: XX%(less than 100%)

  refresh-bio/KMC#207 · Filter by author fanmiaowang opened on Dec 23, 2022
  2

• KMC hangs

  refresh-bio/KMC#206 · Filter by author jodyphelan opened on Dec 13, 2022
  1

• std::thread::hardware_concurrency() should not be used

  refresh-bio/KMC#196 · Filter by author jbd opened on Aug 23, 2022

• kmc_tools always in in1: 0%

  refresh-bio/KMC#194 · Filter by author zhangrengang opened on Aug 9, 2022
  9

• How to hack KMC source to implement variant of k-mer counting

  refresh-bio/KMC#193 · Filter by author rcedgar opened on Aug 9, 2022
  4

• kmc_tools info in help message

  refresh-bio/KMC#192 · Filter by author MihaiPop opened on Jul 7, 2022

• Dumping minimizers/superKmers/signatures

  refresh-bio/KMC#188 · Filter by author mr-eyes opened on May 10, 2022
  3

• How to generate multi-samples kmer count table?

  refresh-bio/KMC#185 · Filter by author zhangrengang opened on Mar 15, 2022
  10

• consistency check of the input format

  refresh-bio/KMC#183 · Filter by author tlemane opened on Feb 11, 2022
  3