Structural Bioinformatics Laboratory
- 18 followers
- San Diego Supercomputer Center, UCSD
- http://bioinformatics.sdsc.edu
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Repositories
- sparql-to-mermaid Public
Render a SPARQL query as a Mermaid diagram (Python port of sparql-examples-utils' mermaid converter)
- mcp-proto-okn Public
A Model Context Protocol (MCP) server that provides tools for querying SPARQL endpoints, with specialized support for NSF-funded Proto-OKN (Prototype Open Knowledge Network) knowledge graphs hosted on the FRINK platform.
- mcp-genelab Public
A Model Context Protocol (MCP) server for querying Neo4j Graph Databases with customized tools to query the NASA GeneLab Knowledge Graph
- df-parallel Public
Comparison of Dataframe libraries for parallel processing of large tabular files on CPU and GPU.
- kg-import Public
kg-import automates the ingestion of heterogeneous datasets into a Knowledge Graph.
- neo4j-ipycytoscape Public
Demo of Neo4j graph visualization with the ipycytoscape Jupyter Lab extension
- mmtf-pyspark Public
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
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