The usual siphon of Development into Main - #8

Merged

lmoresi merged 126 commits into

mainfrom

Jul 28, 2025

Commits on Nov 5, 2024

Links in root directory for the joss-bot
lmoresi
committed
92026e5

Commits on Nov 27, 2024

Pull JOSS changes to main back into dev (#271)
lmoresi
authored
53dbf6d

Commits on Dec 8, 2024

Restore .environment.yml (#276)
lmoresi
authored
7c08857

Commits on Dec 17, 2024

Fixes for #274 - conda environment.yml bugs.
julesghub
committed
e26b413

Commits on Dec 18, 2024

Expressions - a couple of problems with unwrapping nested expressions
lmoresi
committed
176d30a
F0 as expression - copy instead of rebuild
lmoresi
committed
d1c7542
RegionalSpherical redefinition of class
lmoresi
committed
bc47ecd

Commits on Jan 6, 2025

Create environment-macos.yml
lmoresi
committed
8bbecc5

Commits on Jan 15, 2025

fix pressure variable (#278)
bknight1
authored
1256716

Commits on Jan 16, 2025

fix_swamIndex
NengLu
committed
d499998
update swarm.py
NengLu
committed
2ff32fd
RBF interpolation / kdtree add options
lmoresi
committed
8c70ecf
fix_IndexSwarmVariable (#267)
lmoresi
authored
e365dae
set CC env variable (#266)

bknight1
and
julesghub
authored
cdd5fb0

Commits on Jan 17, 2025

Make dev experience better
julesghub
committed
e9471bd
LM december24 (#282)
julesghub
authored
0bed388

Commits on Jan 21, 2025

add minus sign
NengLu
committed
0941cc7

Commits on Jan 22, 2025

add minus sign (#288)
julesghub
authored
d4f2659
fixes for the bodyforce sign change - tests running again
julesghub
committed
123d681

Commits on Jan 23, 2025

Pytest for vector advection with semi-Lagrangian (#212)

jcgraciosa
and
Juan Carlos Graciosa
authored
6528335

Commits on Jan 24, 2025

A parallel test to check for nodal swarm particle loss during advection. (#290)

jcgraciosa
and
Juan Carlos Graciosa
authored
3fd80e3

Commits on Feb 6, 2025

Unify conda environments (#289)

julesghub
and
bknight1
authored
a6b001c
Updates to GH actions - conda unit testing
julesghub
committed
228e070
Spelling typo in build_uw3_and_test.yml
julesghub
authored
90f9bf8

Commits on Feb 12, 2025

Install script updates
julesghub
committed
e41a918
Remove NPY warning by adding macros definition
julesghub
committed
25235f5
Adding new package compilation bits.
julesghub
committed
8ffaa6d
update github workflow to use compile.sh
julesghub
committed
dbcbbde
Update build_uw3_and_test.yml
julesghub
authored
497c042
Adding documentation.
julesghub
committed
e8b1e36
reorder docstring
julesghub
committed
0a47efd

Commits on Feb 20, 2025

Make loop utilities parallel safe (#297)
gthyagi
authored
e3d069b

Commits on Feb 24, 2025

plot correct scalar magnitude in plot vector (#298)
gthyagi
authored
35a037f

Commits on Mar 4, 2025

fixed indexing bug
gthyagi
committed
0a81206

Commits on Mar 5, 2025

fixed indexing bug (#301)
gthyagi
authored
10f42bb

Commits on Mar 20, 2025

Fix reference to LGPL file
lmoresi
committed
0515465

Commits on Mar 26, 2025

Fix url for API documentation in docs
lmoresi
committed
dfe276e
Update __init__.py
lmoresi
authored
03eb8a7

Commits on Mar 27, 2025

Update NextSteps.qmd
lmoresi
authored
157c8e8
Update NextSteps.qmd
lmoresi
authored
43d77fd
Update UW-Background.bib
lmoresi
authored
b64657d

Commits on Mar 28, 2025

Update build_deploy_pdoc.yml
lmoresi
authored
ff66538
Update advDiff test
bknight1
authored
af61e0e

Commits on Apr 7, 2025

Update CONTRIBUTING.md
julesghub
committed
73cbaea

Commits on Apr 8, 2025

Fix vector magnitude - sqrt was missing
julesghub
committed
e2893fa

Commits on Apr 17, 2025

Updating paper as requested by reviewer
lmoresi
committed
68be18e
Remove reviewer comments from MS
lmoresi
committed
b8546d2
workflow update
lmoresi
committed
e1612cd
Add status badge to README
lmoresi
committed
00237f4
Just Stable branch status for now
lmoresi
committed
04e5b7a

Commits on Apr 18, 2025

Update paper.md
lmoresi
committed
764653b

Commits on May 1, 2025

Updating doi list in paper.bib / author contribution order for zenodo
lmoresi
committed
e5b5dca

Commits on May 5, 2025

PostHog telemetry (#312)

julesghub
and
Copilot
authored
554f514
Upd (#313)
lmoresi
authored
0f1dbfc
Update build_deploy_pdoc.yml
julesghub
authored
381d007
Update build_deploy_pdoc.yml (#314)
julesghub
authored
aa3e853
Update build_deploy_pdoc.yml
julesghub
authored
4db0fc8

Commits on May 7, 2025

Commits on May 12, 2025

Update paper as requested
lmoresi
committed
b0b9e88

Commits on May 22, 2025

update GitHub action to fail if failures detected previously
julesghub
committed
fb11d67

Commits on May 26, 2025

Pykdtree (#316)

authored
cd0ea2b
Adding pykdtree into setup.cfg
julesghub
committed
e751352
Disabling pointwise test
julesghub
committed
40dc8b7
Update publish.yml
lmoresi
authored
a0a0419
Update publish.yml
julesghub
authored
28f8974
Update publish.yml (#317)
julesghub
authored
9355897

Commits on May 27, 2025

Update publish.yml
julesghub
authored
107079e

Commits on Jun 5, 2025

update zenodo ordering
julesghub
committed
1b5fddf

Commits on Jun 11, 2025

Changes in the parameter names in the solvers and some other aesthetic changes (#320)

authored
2b30360

Commits on Jun 19, 2025

Fix bug in saving mesh HDF5 file (#315)

brmather
and
Ben Mather
authored
d5fc10c

Commits on Jun 24, 2025

Update mesh view function with levels (#322)
TY-00
authored
427dc8d
Alternative to .vtk for mesh to pyvista
lmoresi
committed
49c09b8
"Fix" for pointwise function test
lmoresi
committed
91bec90
Geometry tools - add point in simplex etc
lmoresi
committed
ae32ac5
Formatting changes
lmoresi
committed
bd8bbb3
Formatting changes
lmoresi
committed
4670fe8
Hiding some functions
lmoresi
committed
086c0d7
BASIC swarm
lmoresi
committed
4841242
Hiding some functions
lmoresi
committed
a53470b

Commits on Jun 25, 2025

Diffusion bits (#311)

bknight1
and
julesghub
authored
3f02797
updated checkpoint_xdmf to look for correct vertex field name in h5 file (#324)
gthyagi
authored
c0a588e

Commits on Jun 26, 2025

Get all local points from DM label (#319)

brmather
and
Ben Mather
authored
618f039

Commits on Jun 28, 2025

Advection for BASIC swarm
lmoresi
committed
8d6c94b
Merge branch 'swarm-rework-lm-2025' into swarm-rework-dev-merged
lmoresi
authored
20c4731
kdtree updates propagating into swarm rework code
lmoresi
committed
2722460

Commits on Jun 30, 2025

updated checkpoint_xdmf method save discontinuous fields properly (#1)
gthyagi
authored
faed46c

Commits on Jul 1, 2025

Mesh class: clean up code and update KDTree
lmoresi
committed
b1b8dca
Add docstrings to swarm classes. NodalPointBasicSwarm
lmoresi
committed
4cc1209

Commits on Jul 3, 2025

NodalSwarm rework
lmoresi
committed
ee394d2

Commits on Jul 7, 2025

Fix uw.function.evaluate / eliminate evalf
lmoresi
committed
0778b7d
Adding back nanoflann code temporarily
lmoresi
committed
0c6ed17
Swarm -> evalf rework
lmoresi
committed
f1daed6

Commits on Jul 8, 2025

Adding rbf as alternative to evalf in function.evaluate
lmoresi
committed
5f33fb3

Commits on Jul 9, 2025

Added fix to mesh2mesh_meshVariable() (#4)

jcgraciosa
and
Juan Carlos Graciosa
authored
942f5f6

Commits on Jul 21, 2025

Merge branch 'development' into joss-submission
lmoresi
authored
a640747
Update .zenodo.json

lmoresi
and
Copilot
authored
6f7d296

Commits on Jul 24, 2025

Update github action: build+test+deploy dev docker
julesghub
committed
f141acb
Merge branch 'development' of github.com:underworldcode/underworld3 into development
julesghub
committed
bd4116e
Update setup.py
lmoresi
authored
2111529
Merge pull request #5 from underworldcode/joss-submission
lmoresi
authored
cf66bdb
Minor fixes to quickstart
lmoresi
committed
b8becc6
update for dev docker gh action file
julesghub
committed
b291ae9
Typo fix
julesghub
committed
c757223
Add conditional update to GH action
julesghub
committed
861bc10
fixes
julesghub
committed
5428076
Update docker-image.yml
julesghub
authored
603bcf5
Just make a dev docker with no dependency of other workflows
julesghub
committed
a43af52
Update syntax in Dockerfile
julesghub
committed
9a71dc6
Merge pull request #2 from underworldcode/swarm-rework-dev-merged
lmoresi
authored
0de2376

Commits on Jul 25, 2025

some small corrections to PR 2
Juan Carlos Graciosa
committed
7482989
Merge pull request #7 from jcgraciosa/swarm-edit
jcgraciosa
authored
0f5c911
Update README.md
julesghub
authored
5ddea7e
Update README.md
julesghub
authored
9bedea1

Commits on Jul 28, 2025

Merge branch 'main' into development
lmoresi
authored
6dd542c
Update tests/test_1130_IndexSwarmVariable.py

lmoresi
and
Copilot
authored
8e290d5
Update tests/test_1100_AdvDiffCartesian.py

lmoresi
and
Copilot
authored
9c9700a
Update src/underworld3/systems/ddt.py

lmoresi
and
Copilot
authored
2db9069