[v3] Open a zarr v2 group without specifying `zarr_version` fails with zarr v3

[will-moore]

Zarr version

2.16.2.dev137+gcf37b134

Numcodecs version

0.12.1

Python Version

3.10.14

Operating System

Mac

Installation

pip install . (from origin/v3 branch at * ee30347 (HEAD, origin/v3, origin/HEAD) Feature: Top level V3 API (#1884)

Description

I'd like to be able to open a zarr group without having to know specify that it's zarr_version. E.g. 2 or 3.

See code below to reproduce

Steps to reproduce

test_read_v2.py

import zarr
import os
from zarr.v2 import open_group

path = "test.zarr"
if os.path.exists(path):
    import shutil
    shutil.rmtree(path)

# create v2 group
root = open_group(path, mode='w')
root.attrs["test"] = "v2"
foo = root.create_group('foo')
root2 = open_group(path, mode='a')
print('root2', root2)

# specify zarr_format - works
root = zarr.open(store=path, zarr_format=2)
print("root", root)

# try to guess zarr_format - fails
root = zarr.open(store=path)
print("root", root)

Additional output

$ python test_read_v2.py 
root2 <zarr.v2.hierarchy.Group '/'>
root Group(_async_group=<AsyncGroup file://test.zarr>)
Traceback (most recent call last):
  File "/Users/wmoore/opt/anaconda3/envs/zarr_v3/lib/python3.10/site-packages/zarr/api/asynchronous.py", line 198, in open
    return await open_array(store=store_path, zarr_format=zarr_format, **kwargs)
  File "/Users/wmoore/opt/anaconda3/envs/zarr_v3/lib/python3.10/site-packages/zarr/api/asynchronous.py", line 865, in open_array
    raise e
  File "/Users/wmoore/opt/anaconda3/envs/zarr_v3/lib/python3.10/site-packages/zarr/api/asynchronous.py", line 860, in open_array
    return await AsyncArray.open(store_path, zarr_format=zarr_format)
  File "/Users/wmoore/opt/anaconda3/envs/zarr_v3/lib/python3.10/site-packages/zarr/array.py", line 337, in open
    raise KeyError(store_path)  # filenotfounderror?
KeyError: StorePath(LocalStore, 'file://test.zarr')

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/Users/wmoore/Desktop/ZARR/scripts/test_read_v2.py", line 23, in <module>
    root = zarr.open(store=path)
  File "/Users/wmoore/opt/anaconda3/envs/zarr_v3/lib/python3.10/site-packages/zarr/api/synchronous.py", line 45, in open
    obj = sync(
  File "/Users/wmoore/opt/anaconda3/envs/zarr_v3/lib/python3.10/site-packages/zarr/sync.py", line 92, in sync
    raise return_result
  File "/Users/wmoore/opt/anaconda3/envs/zarr_v3/lib/python3.10/site-packages/zarr/sync.py", line 51, in _runner
    return await coro
  File "/Users/wmoore/opt/anaconda3/envs/zarr_v3/lib/python3.10/site-packages/zarr/api/asynchronous.py", line 200, in open
    return await open_group(store=store_path, zarr_format=zarr_format, **kwargs)
  File "/Users/wmoore/opt/anaconda3/envs/zarr_v3/lib/python3.10/site-packages/zarr/abc/store.py", line 203, in set_or_delete
    await byte_setter.set(value)
  File "/Users/wmoore/opt/anaconda3/envs/zarr_v3/lib/python3.10/site-packages/zarr/store/core.py", line 40, in set
    await self.store.set(self.path, value)
  File "/Users/wmoore/opt/anaconda3/envs/zarr_v3/lib/python3.10/site-packages/zarr/store/local.py", line 128, in set
    self._check_writable()
  File "/Users/wmoore/opt/anaconda3/envs/zarr_v3/lib/python3.10/site-packages/zarr/abc/store.py", line 29, in _check_writable
    raise ValueError("store mode does not support writing")
ValueError: store mode does not support writing

[jhamman]

Thanks for the report here @will-moore. I can look into this.

[d-v-b]

I tried a modernized version of this code on my local machine and everything worked, so I think this can be closed. @will-moore let me know if I should re-open

[will-moore]

All good, thanks!